有哪些信誉好的足球投注网站an integrative approach to the identification of arabidopsis and rice genes involved in xylan and secondary wall development一个综合的方法来识别拟南芥和水稻的基因参与木聚糖和次生壁的发展.pdfVIP
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an integrative approach to the identification of arabidopsis and rice genes involved in xylan and secondary wall development一个综合的方法来识别拟南芥和水稻的基因参与木聚糖和次生壁的发展
An Integrative Approach to the Identification of
Arabidopsis and Rice Genes Involved in Xylan and
Secondary Wall Development
Ai Oikawa1,2, Hiren J. Joshi1,2, Emilie A. Rennie1,3, Berit Ebert1,2, Chithra Manisseri1,2, Joshua L.
Heazlewood1,2, Henrik Vibe Scheller1,2,3*
1 Feedstocks Division, Joint BioEnergy Institute, Emeryville, California, United States of America, 2 Physical Biosciences Division, Lawrence Berkeley National Laboratory,
Berkeley, California, United States of America, 3 Department of Plant Microbial Biology, University of California, Berkeley, California, United States of America
Abstract
Xylans constitute the major non-cellulosic component of plant biomass. Xylan biosynthesis is particularly pronounced in
cells with secondary walls, implying that the synthesis network consists of a set of highly expressed genes in such cells. To
improve the understanding of xylan biosynthesis, we performed a comparative analysis of co-expression networks between
Arabidopsis and rice as reference species with different wall types. Many co-expressed genes were represented by orthologs
in both species, which implies common biological features, while some gene families were only found in one of the species,
and therefore likely to be related to differences in their cell walls. To predict the subcellular location of the identified
proteins, we developed a new method, PFANTOM (plant protein family information-based predictor for endomembrane),
which was shown to perform better for proteins in the endomembrane system than other available prediction methods.
Based on the combined approach of co-expression and predicted cellular localization, we propose a model for Arabidopsis
and rice xylan synthesis in the Golgi apparatus and signaling from plasma membrane to nucleus for secondary cell wall
differentiation. As an experimental validation of the model, we show that a
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