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whole-genome analysis of the short-root developmental pathway in arabidopsis在拟南芥全基因组分析short-root发展途径
PLoS BIOLOGY Whole-Genome Analysis of the SHORT-ROOT Developmental Pathway in Arabidopsis 1[¤a 1[¤b 2 1 1 3 Mitchell P. Levesque , Teva Vernoux , Wolfgang Busch , Hongchang Cui , Jean Y. Wang , Ikram Blilou , 3 1¤c 1¤d 2 3 1* Hala Hassan , Keiji Nakajima , Noritaka Matsumoto , Jan U. Lohmann , Ben Scheres , Philip N. Benfey 1 Department of Biology and Institute for Genome Sciences and Policy, Duke University, Durham, North Carolina, United States of America, 2 Max Planck Institute for ¨ Developmental Biology, Tubingen, Germany, 3 Department of Molecular Cell Biology, Utrecht University, Utrecht, Netherlands Stem cell function during organogenesis is a key issue in developmental biology. The transcription factor SHORT-ROOT (SHR) is a critical component in a developmental pathway regulating both the specification of the root stem cell niche and the differentiation potential of a subset of stem cells in the Arabidopsis root. To obtain a comprehensive view of the SHR pathway, we used a statistical method called meta-analysis to combine the results of several microarray experiments measuring the changes in global expression profiles after modulating SHR activity. Meta-analysis was first used to identify the direct targets of SHR by combining results from an inducible form of SHR driven by its endogenous promoter, ectopic expression, followed by cell sorting and comparisons of mutant to wild-type roots. Eight putative
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