computational docking of antibody-antigen complexes, opportunities and pitfalls illustrated by influenza hemagglutinin计算对接antibody-antigen复合物、机会和陷阱流感病毒血凝素所示.pdfVIP
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computational docking of antibody-antigen complexes, opportunities and pitfalls illustrated by influenza hemagglutinin计算对接antibody-antigen复合物、机会和陷阱流感病毒血凝素所示
Int. J. Mol. Sci. 2011, 12, 226-251; doi:10.3390/ijm OPEN ACCESS International Journal of Molecular Sciences ISSN 1422-0067 /journal/ijms Article Computational Docking of Antibody-Antigen Complexes, Opportunities and Pitfalls Illustrated by Influenza Hemagglutinin Mattia Pedotti †, Luca Simonelli †, Elsa Livoti and Luca Varani * Institute for Research in Biomedicine, via Vela 6, 6500 Bellinzona, Switzerland; E-Mails: mattia.pedotti@irb.unisi.ch (M.P.); luca.simonelli@irb.unisi.ch (L.S.); elsa.livoti@irb.unisi.ch (E.L.) † These authors contributed equally to this work. * Author to whom correspondence should be addressed; E-Mail: luca.varani@irb.unisi.ch; Tel.: +41-91-820-0321; Fax: +41-91-820-0302. Received: 2 November 2010; in revisedform: 22 December 2010 / Accepted: 4 January 2011 / Published: 5 January 2011 Abstract: Antibodies play an increasingly important role in both basic research and the pharmaceutical industry. Since their efficiency depends, in ultimate analysis, on their atomic interactions with an antigen, studying such interactions is important to understand how they function and, in the long run, to design new molecules with desired properties. Computational docking, the process of predicting the conformation of a complex from its separated components, is emerging as a fast and affordable technique for the structural characterization of antibody-antigen complexes. In this manuscript, we first describe t
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