giant panda genomic data provide insight into the birth-and-death process of mammalian major histocompatibility complex class ii genes大熊猫基因组数据提供洞察哺乳动物的出生和死亡过程主要组织相容性复合体ii级基因.pdfVIP

giant panda genomic data provide insight into the birth-and-death process of mammalian major histocompatibility complex class ii genes大熊猫基因组数据提供洞察哺乳动物的出生和死亡过程主要组织相容性复合体ii级基因.pdf

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giant panda genomic data provide insight into the birth-and-death process of mammalian major histocompatibility complex class ii genes大熊猫基因组数据提供洞察哺乳动物的出生和死亡过程主要组织相容性复合体ii级基因

Giant Panda Genomic Data Provide Insight into the Birth-and-Death Process of Mammalian Major Histocompatibility Complex Class II Genes Qiu-Hong Wan1,2, Chang-Jun Zeng1,2, Xiao-Wei Ni1,2, Hui-Juan Pan1,2, Sheng-Guo Fang1,2* 1 College of Life Sciences, Zhejiang University, Hangzhou, People’s Republic of China, 2 State Conservation Center for Gene Resources of Endangered Wildlife and the Key Laboratory of Conservation Genetics and Reproductive Biology for Endangered Wild Animals of the Ministry of Education, Hangzhou, People’s Republic of China Abstract To gain an understanding of the genomic structure and evolutionary history of the giant panda major histocompatibility complex (MHC) genes, we determined a 636,503-bp nucleotide sequence spanning the MHC class II region. Analysis revealed that the MHC class II region from this rare species contained 26 loci (17 predicted to be expressed), of which 10 are classical class II genes (1 DRA, 2 DRB, 2 DQA, 3 DQB, 1 DYB, 1 DPA, and 2 DPB) and 4 are non-classical class II genes (1 DOA, 1 DOB, 1 DMA, and 1 DMB). The presence of DYB, a gene specific to ruminants, prompted a comparison of the giant panda class II sequence with those of humans, cats, dogs, cattle, pigs, and mice. The results indicated that birth and death events within the DQ and DRB-DY regions led to major lineage differences, with absence of these regions in the cat and in humans and mice respectively. The phylogenetic trees constructed using all expressed alpha and beta genes from marsupials and placental mammals showed that: (1) because marsupials carry loci corresponding to DR, DP, DO and DM genes, those subregions most likely developed before the divergence of marsupials and placental mammals, approximately 150 million years ago (MYA); (2) conversely, the DQ and DY regions must have evolved later, but before the radiation of placent

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