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Discovery of porcine microRNAs and profiling from skeletal muscle tissues during development
Discovery of Porcine microRNAs and Profiling from
Skeletal Muscle Tissues during Development
Ting-Hua Huang, Meng-Jin Zhu, Xin-Yun Li, Shu-Hong Zhao*
Key Laboratory of Agricultural Animal Genetics, Breeding, and Reproduction of Ministry of Education Key Laboratory of Swine Genetics and Breeding of Ministry of
Agriculture, Huazhong Agricultural University, Wuhan, People’s Republic of China
Abstract
MiRNAs (microRNAs) play critical roles in many important biological processes such as growth and development in
mammals. In this study, we identified hundreds of porcine miRNA candidates through in silico prediction and analyzed their
expression in developing skeletal muscle using microarray. Microarray screening using RNA samples prepared from a 33-day
whole embryo and an extra embryo membrane validated 296 of the predicted candidates. Comparative expression profiling
across samples of longissimus muscle collected from 33-day and 65-day post-gestation fetuses, as well as adult pigs,
identified 140 differentially expressed miRNAs amongst the age groups investigated. The differentially expressed miRNAs
showed seven distinctive types of expression patterns, suggesting possible involvement in certain biological processes. Five
of the differentially expressed miRNAs were validated using real-time PCR. In silico analysis of the miRNA-mRNA interaction
sites suggested that the potential mRNA targets of the differentially expressed miRNAs may play important roles in muscle
growth and development.
Citation: Huang T-H, Zhu M-J, Li X-Y, Zhao S-H (2008) Discovery of Porcine microRNAs and Profiling from Skeletal Muscle Tissues during Development. PLoS
ONE 3(9): e3225. doi:10.1371/journal.pone.0003225
Editor: Suzannah Rutherford, Fred Hutchinson Cancer Research Center, United States of America
Received March 24, 2008; Accepted August 15, 2008; Published September 16, 2008
Copyright: 2008 Huang et al. This is an open-access article distributed under the terms of the Creative Commons A
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